graph.edge.test {HapVLMC} | R Documentation |
Test case-control counts on edge versus totals. Edge is not tested if it does not participate in a merge (edges don't count towards merge if their count is < count.edge.threshold). Edge is not tested if total count for edge is < test.edge.threshold. Result is matrix, first column is level, second column is node, third column is p-value.
graph.edge.test(mygraph, count.edge.threshold = 2, test.edge.threshold = 50)
mygraph |
A haplotype VLMC graph created with make.graph . |
count.edge.threshold |
Edges are not counted if their count is less than this value. |
test.edge.threshold |
Edges are not tested if the edge count is less than this value. |
A matrix, first column is level, second column is node, third column is edge, fourth column is p-value. One row per test.
Sharon Browning
S. Browning 2006 "Multilocus association mapping using variable length Markov chains".