make.graph {HapVLMC}R Documentation

Make Haplotype VLMC Graph

Description

Creates a tree graph and then merges levels sequentially to obtain final VLMC graph.

Usage

make.graph(haplo.array, is.case = NULL, track.progress=T)

Arguments

haplo.array A matrix of alleles (represented as positive integers). Rows are haplotypes, columns are marker loci.
is.case A vector of true/false values, one per row in the haplo.array. May be omitted. If so, the case-control status may be added later via alter.case.
track.progress Logical. If TRUE, there will be a running commentary of the make.graph progress, starting with making the initial tree, and then merging at each level.

Value

A graph with a tree structure.

Author(s)

Sharon Browning

References

S. Browning 2006 "Multilocus association mapping using variable length Markov chains".

See Also

draw.graph, graph.edge.test, alter.case.


[Package HapVLMC version 2.0 Index]