make.graph {HapVLMC} | R Documentation |
Creates a tree graph and then merges levels sequentially to obtain final VLMC graph.
make.graph(haplo.array, is.case = NULL, track.progress=T)
haplo.array |
A matrix of alleles (represented as positive integers). Rows are haplotypes, columns are marker loci. |
is.case |
A vector of true/false values, one per row in the haplo.array. May be omitted.
If so, the case-control status may be added later via alter.case .
|
track.progress |
Logical. If TRUE, there will be a running commentary of the make.graph progress, starting with making the initial tree, and then merging at each level. |
A graph with a tree structure.
Sharon Browning
S. Browning 2006 "Multilocus association mapping using variable length Markov chains".
draw.graph
, graph.edge.test
, alter.case
.