HapVLMC

This code implements the method in Browning, S., 2006, "Multilocus association mapping using variable length Markov chains", American Journal of Human Genetics, June 2006. Please cite this paper in any publications resulting from use of the method or code.

Download gzipped tar file containing the R code.

Unix/Linux instructions:

gunzip HapVLMC.tar.gz

tar –xvf HapVLMC.tar

Read the README file in the HapVLMC directory for instructions on installing.

The code can be used with R for Windows, however I have not compiled a library, so you would need to “source” each of the files.

E-mail me any comments.

A new fast version that can handle hundreds of thousands of markers will be available in a few months.

Back to Sharon Browning’s web page.