@Article{Murrell:2009,
  author        = {Paul Murrell},
  title         = {Importing Vector Graphics: The \pkg{grImport}
           Package for \proglang{R}},
  journal       = {Journal of Statistical Software},
  year          = {2009},
  volume        = {30},
  number        = {4},
  pages        = {1--37},
  url           = {http://www.jstatsoft.org/v30/i04/}
}

@BOOK{lattice,
title={\pkg{lattice}: Multivariate Data Visualization with \proglang{R}},
author={Deepayan Sarkar},
publisher={Springer-Verlag},
address={New York},
year={2008},
note={{ISBN} 9780387759685}
}

 @Manual{R,
    title = {\proglang{R}: A Language and Environment for Statistical Computing},
    author = {{\proglang{R} Development Core Team}},
    organization = {\proglang{R} Foundation for Statistical Computing},
    address = {Vienna, Austria},
    year = {2008},
    note = {{ISBN} 3-900051-07-0},
    url = "http://www.R-project.org/",
  }

@book{inkscape,
 author = {Tavmjong Bah},
 title = {\pkg{Inkscape}: Guide to a Vector Drawing Program},
 year = {2007},
 isbn = {9780131357945},
 publisher = {Prentice Hall Press},
 address = {Upper Saddle River, NJ, USA},
 }

@book{gimp,
 author = {Olof S. Kylander and Karin Kylander},
 title = {\pkg{GIMP}: The Official Handbook},
 year = {1999},
 isbn = {1576105202},
 publisher = {Coriolis Value},
}

  @Manual{pixmap,
    title = {\pkg{pixmap}: Bitmap Images (``Pixel Maps'')},
    author = {Roger Bivand and Friedrich Leisch and Martin Maechler},
    year = {2008},
    note = {\proglang{R} package version 0.4-9},
    url = {http://CRAN.R-project.org/package=pixmap},
  }
  @Manual{rimage,
    title = {\pkg{rimage}: Image Processing Module for \proglang{R}},
    author = {{Nikon Systems Inc.}},
    year = {2005},
    note = {\proglang{R} package version 0.5-7},
    url = {http://CRAN.R-project.org/package=rimage},
  }
  @Manual{EBimage,
    title = {\pkg{EBImage}: Image Processing and Image Analysis Toolkit for \proglang{R}},
    author = {Oleg Sklyar and Gregoire Pau and Mike Smith and Wolfgang Huber},
    year = {2008},
    note = {\proglang{R} package version 2.4.0},
    url = {http://www.ebi.ac.uk/~osklyar/EBImage/},
  }

@Article{Rnews:EBImage,
  author = {Oleg Sklyar and Wolfgang Huber},
  title = {Image Analysis for Microscopy Screens},
  journal = {\proglang{R} News},
  year = 2006,
  volume = 6,
  number = 5,
  pages = {12--16},
  url = {http://CRAN.R-project.org/doc/Rnews/},
}


@BOOK{postscript,
title={Postscript Language Reference},
author={{Adobe Systems}},
publisher={Addison-Wesley},
year={1999},
edition={3rd},
isbn={9780201379228}
}

@BOOK{pdf,
title={PDF Reference Version 1.6},
author={{Adobe Systems}},
publisher={Adobe Press},
year={2005},
edition={5th},
isbn={9780321304742}
}

@manual{svg,
  organization="{World Wide Web Consortium (W3C)}",
  title="{Scalable Vector Graphics ({SVG}) 1.1 Specification}",
  author={Jon Ferraiolo and Fujisawa Jun and Dean Jackson},
  year=2003,
  url = "http://www.w3.org/TR/SVG11/"
}

@BOOK{imagemagick,
title={The Definitive Guide to \pkg{ImageMagick}},
author={Michael Still},
publisher={Apress},
year={2005},
isbn={9781590595909},
}

@manual{ghostscript,
title={Ghostscript User Manual},
author={Thomas Merz},
year=1997,
url="ftp://mirror.cs.wisc.edu/pub/mirrors/ghost/gs5man_e.pdf"
}

@manual{xml,
  title="{Extensible Markup Language} ({XML}) 1.0",
  organization="{World Wide Web Consortium (W3C)}",
  author={Tim Bray and Jean Paoli and C. M. Sperberg-McQueen and Eve Maler and Fran\c{c}ois Yergeau},
  year=2006,
  url="http://www.w3.org/TR/2006/REC-xml-20060816/",
}

 @Manual{pkgXML,
    title = {\pkg{XML}: Tools for Parsing and Generating {XML} Within \proglang{R} and \proglang{S-PLUS}},
    author = {Duncan {Temple Lang}},
    year = {2008},
    note = {\proglang{R} package version 1.95-3},
    url = {http://CRAN.R-project.org/package=XML},
  }

@misc{libxml,
  author="Daniel Veillard",
  title={\pkg{libxml}: The XML \proglang{C} Parser and Toolkit of {GNOME}},
  year=2008,
  Howpublished = "\url{http://xmlsoft.org/}",
}

@misc{libxslt,
  author="Daniel Veillard",
  title={The {XSLT} \proglang{C} Library for {GNOME}},
  year=2009,
  Howpublished = "\url{http://xmlsoft.org/XSLT/}",
}

@manual{xsl,
  title={XSL Transformations ({XSLT})},
  organization="{World Wide Web Consortium (W3C)}",
  author={James Clark},
  year=1999,
  url="http://www.w3.org/TR/xslt/",
}  

@article{Rnews:Lumley:2004a,
  author = {Thomas Lumley},
  title = {The \pkg{survival} Package},
  journal = {\proglang{R} News},
  year = 2004,
  volume = 4,
  number = 1,
  pages = {26--28},
  url = {http://CRAN.R-project.org/doc/Rnews/},
}

@article{weblogo,
author={G E Crooks and G Hon and J M Chandonia and S E Brenner},
title={\pkg{WebLogo}: A Sequence Logo Generator},
journal={Genome Research}, 
volume=14,
pages={1188--1190}, 
year=2004
}

@article{sequencelogo,
author={T D Schneider and R M Stephens},
year= 1990,
title={Sequence Logos: A New Way to Display Consensus Sequences},
journal={Nucleic Acids Res},
volume=18,
pages={6097--6100}
}

@article{Rnews:Murrell:2003,
  author = {Paul Murrell},
  title = {Integrating \pkg{grid} Graphics Output with Base Graphics
                  Output},
  journal = {\proglang{R} News},
  year = 2003,
  volume = 3,
  number = 2,
  pages = {7--12},
  month = {October},
  url = {http://CRAN.R-project.org/doc/Rnews/},
  pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2003-2.pdf}
}

@book{R:Murrell:2005,
  author = {Paul Murrell},
  title = {\proglang{R} Graphics},
  publisher = {Chapman \& Hall/CRC},
  year = 2005,
  address = {Boca Raton, FL},
  note = {ISBN 1-584-88486-X},
  url = {http://www.stat.auckland.ac.nz/~paul/RGraphics/rgraphics.html},
}

@manual{cran,
  author = {{\proglang{R} Foundation for Statistical Computing}},
  title="{Comprehensive \proglang{R} Archive Network}",
  year=2008,
  url = "http://CRAN.R-project.org/",
}

@article{phagedisplay,
author = {Smith, George P. and Petrenko, Valery A.},
title = {Phage Display},
journal = {Chemical Reviews},
volume = {97},
number = {2},
pages = {391-410},
year = {1997}
}

