# Base image
FROM ubuntu:16.04
MAINTAINER Paul Murrell <paul@stat.auckland.ac.nz>

# add CRAN PPA
RUN apt-get update && apt-get install -y apt-transport-https
RUN echo 'deb https://cloud.r-project.org/bin/linux/ubuntu xenial/' > /etc/apt/sources.list.d/cran.list
RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9

# Install additional software
RUN apt-get update && apt-get install -y \
    xsltproc \
    r-base=3.3.2* \ 
    wget \
    libxml2-dev \
    libcurl4-openssl-dev \
    libssl-dev \
    subversion \
    graphviz
RUN Rscript -e 'install.packages(c("knitr", "devtools"), repos="https://cran.rstudio.com/")'
RUN Rscript -e 'library(devtools); install_version("XML", "3.98-1.4", repos="https://cran.rstudio.com/")'
RUN Rscript -e 'library(devtools); install_version("gridSVG", "1.5-0", repos="https://cran.rstudio.com/")'
RUN Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(c("graph", "Rgraphviz"))'
RUN Rscript -e 'library(devtools); install_version("classGraph", "0.7-5", repos="https://cran.rstudio.com/")'
RUN Rscript -e 'library(devtools); install_github("pmur002/DOM@v0.4")'
RUN cd /home && wget https://bitbucket.org/ariya/phantomjs/downloads/phantomjs-2.1.1-linux-x86_64.tar.bz2 && bunzip2 phantomjs-2.1.1-linux-x86_64.tar.bz2 && tar xvf phantomjs-2.1.1-linux-x86_64.tar