R Under development (unstable) (2014-03-13 r65182) -- "Unsuffered Consequences" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [Previously saved workspace restored] > > library(knitr) > > knit("aklrug.Rhtml") processing file: aklrug.Rhtml | | | 0% | | | 1% ordinary text without R code | |. | 1% label: unnamed-chunk-1 (with options) List of 3 $ echo : logi FALSE $ results: chr "hide" $ message: logi FALSE Attaching package: 'gridSVG' The following object is masked from 'package:grDevices': dev.off Loading required package: grid Loading required package: XML | |. | 2% ordinary text without R code label: unnamed-chunk-2 | |.. | 3% ordinary text without R code label: unnamed-chunk-3 (with options) List of 1 $ eval: logi FALSE | |... | 4% ordinary text without R code | |... | 5% label: unnamed-chunk-4 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE ordinary text without R code | |.... | 6% label: unnamed-chunk-5 (with options) List of 1 $ eval: logi FALSE ordinary text without R code | |.... | 7% label: unnamed-chunk-6 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |..... | 7% ordinary text without R code | |..... | 8% label: unnamed-chunk-7 (with options) List of 1 $ eval: logi FALSE | |...... | 8% ordinary text without R code | |...... | 9% label: unnamed-chunk-8 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |...... | 10% ordinary text without R code | |....... | 10% label: unnamed-chunk-9 | |....... | 11% ordinary text without R code label: unnamed-chunk-10 (with options) List of 1 $ eval: logi FALSE | |........ | 12% ordinary text without R code label: unnamed-chunk-11 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |........ | 13% ordinary text without R code | |......... | 14% label: unnamed-chunk-12 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE ordinary 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|............................ | 43% label: unnamed-chunk-38 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |............................ | 44% ordinary text without R code | |............................. | 44% label: unnamed-chunk-39 | |............................. | 45% ordinary text without R code label: unnamed-chunk-40 | |.............................. | 46% ordinary text without R code label: unnamed-chunk-41 (with options) List of 1 $ eval: logi FALSE | |.............................. | 47% ordinary text without R code | |............................... | 47% label: unnamed-chunk-42 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |............................... | 48% ordinary text without R code | |................................ | 49% label: unnamed-chunk-43 (with options) List of 1 $ eval: logi FALSE ordinary text without R code | |................................ | 50% label: unnamed-chunk-44 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |................................. | 50% ordinary text without R code | |................................. | 51% label: unnamed-chunk-45 ordinary text without R code | |.................................. | 52% label: unnamed-chunk-46 | |.................................. | 53% ordinary text without R code | |................................... | 53% label: unnamed-chunk-47 (with options) List of 1 $ eval: logi FALSE | |................................... | 54% ordinary text without R code label: unnamed-chunk-48 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |.................................... | 55% ordinary text without R code label: unnamed-chunk-49 (with options) List of 1 $ eval: logi FALSE | |.................................... | 56% ordinary text without R code | |..................................... | 56% label: unnamed-chunk-50 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |..................................... | 57% ordinary text without R code | |..................................... | 58% label: unnamed-chunk-51 (with options) List of 2 $ warning: logi FALSE $ message: logi FALSE Note: the specification for S3 class "AsIs" in package 'BiocGenerics' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class. Note: the specification for S3 class "connection" in package 'BiocGenerics' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class. Note: the specification for S3 class "file" in package 'BiocGenerics' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class. Note: the specification for S3 class "pipe" in package 'BiocGenerics' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class. Note: the specification for S3 class "textConnection" in package 'BiocGenerics' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class. Attaching package: 'graph' The following object is masked from 'package:XML': addNode | |...................................... | 58% ordinary text without R code | |...................................... | 59% label: unnamed-chunk-52 | |....................................... | 59% ordinary text without R code | |....................................... | 60% label: unnamed-chunk-53 ordinary text without R code | |........................................ | 61% label: unnamed-chunk-54 (with options) List of 1 $ eval: logi FALSE | |........................................ | 62% ordinary text without R code label: unnamed-chunk-55 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |......................................... | 63% ordinary text without R code label: unnamed-chunk-56 | |......................................... | 64% ordinary text without R code | |.......................................... | 64% label: 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|..................................................... | 82% ordinary text without R code | |...................................................... | 82% label: unnamed-chunk-73 (with options) List of 1 $ eval: logi FALSE | |...................................................... | 83% ordinary text without R code | |...................................................... | 84% label: unnamed-chunk-74 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |....................................................... | 84% ordinary text without R code | |....................................................... | 85% label: unnamed-chunk-75 (with options) List of 2 $ echo : logi FALSE $ warning: logi FALSE Warning in readLines("ellipse-gridsvg.svg") : incomplete final line found on 'ellipse-gridsvg.svg' ordinary text without R code | |........................................................ | 86% label: unnamed-chunk-76 ordinary text without R code | |......................................................... | 87% label: unnamed-chunk-77 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |......................................................... | 88% ordinary text without R code label: unnamed-chunk-78 (with options) List of 1 $ eval: logi FALSE | |.......................................................... | 89% ordinary text without R code label: unnamed-chunk-79 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |.......................................................... | 90% ordinary text without R code | |........................................................... | 90% label: unnamed-chunk-80 (with options) List of 1 $ eval: logi FALSE | |........................................................... | 91% ordinary text without R code | 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(with options) List of 1 $ eval: logi FALSE | |............................................................... | 97% ordinary text without R code label: unnamed-chunk-86 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |................................................................ | 98% ordinary text without R code label: unnamed-chunk-87 (with options) List of 1 $ eval: logi FALSE | |................................................................ | 99% ordinary text without R code | |.................................................................| 99% label: unnamed-chunk-88 (with options) List of 4 $ echo : logi FALSE $ results : chr "hide" $ fig.keep: chr "none" $ warning : logi FALSE | |.................................................................| 100% ordinary text without R code output file: aklrug.html [1] "aklrug.html" > > # Little post-processing > temp <- readLines("aklrug.html") > writeLines(gsub("font-weight: bold;", "", temp), "aklrug.html") > > > proc.time() user system elapsed 5.672 0.080 6.379